GPTomics
Install Clawhub Installer
Pick your agent. Every command is ready to paste.
npx skills add GPTomics/bioSkills --skill clawhub-installerThe open skills CLI detects your agents (Claude Code, Cursor, Codex and 70+ more) and installs to the right folder. Add -g to install globally.
01
Install it
Run the command above, or upload the folder in Claude.
02
Ask naturally
Describe the task. Your agent loads clawhub-installer when the request matches its description.
03
Name it if needed
If it does not trigger, say “use the clawhub-installer skill”. In Codex, type $clawhub-installer.
bioSkills Installer
Meta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis.
Installation
Run the bundled install script to download and install all bioSkills:
bash scripts/install-bioskills.sh
Or install only specific categories:
bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression"
What Gets Installed
425 skills across 62 categories covering:
- Sequence & Alignment (40): sequence-io, sequence-manipulation, alignment, alignment-files, database-access
- Read Processing (11): read-qc, read-alignment
- RNA-seq & Expression (14): differential-expression, rna-quantification, expression-matrix
- Single-Cell & Spatial (25): single-cell, spatial-transcriptomics
- Variant Analysis (21): variant-calling, copy-number, phasing-imputation
- Epigenomics (25): chip-seq, atac-seq, methylation-analysis, hi-c-analysis
- Metagenomics & Microbiome (13): metagenomics, microbiome
- Genomics & Assembly (29): genome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design
- Regulatory & Causal (13): gene-regulatory-networks, causal-genomics, rna-structure
- Temporal & Ecological (11): temporal-genomics, ecological-genomics
- Immunology & Clinical (25): immunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics
- Specialized Omics (36): proteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy
- RNA Biology (20): small-rna-seq, epitranscriptomics, clip-seq, ribo-seq
- Phylogenetics & Evolution (16): phylogenetics, population-genetics, comparative-genomics
- Structural & Systems (11): structural-biology, systems-biology
- Screens & Cytometry (22): crispr-screens, flow-cytometry, imaging-mass-cytometry
- Pathway & Integration (14): pathway-analysis, multi-omics-integration, restriction-analysis
- Infrastructure (39): data-visualization, machine-learning, workflow-management, reporting, experimental-design, long-read-sequencing
- Workflows (40): end-to-end pipelines (FASTQ to results)
After Installation
Once installed, skills are automatically triggered based on the task at hand. Example requests:
- "I have RNA-seq counts from treated vs control samples - find the differentially expressed genes"
- "Call variants from this whole genome sequencing BAM file"
- "Cluster my single-cell RNA-seq data and find marker genes"
- "Predict the structure of this protein sequence"
- "Run a metagenomics classification on these shotgun reads"
Source
Tips for Clawhub Installer
- • Start a fresh session after installing so your agent picks up the new skill.
- • This skill ships scripts. Read them before the first run, and run it in a project without secrets first.
- • It is part of a pack with 30 skills. Install only the ones you need with --skill to keep triggers precise.
- • If two skills overlap, mention the one you want by name.
Questions about Clawhub Installer
What does the Clawhub Installer skill do?
Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant calling, metagenomics, structural biology, and 56 more categories. Use when setting up bioinformatics capabilities or when a bioinformatics task requires specialized skills not yet installed.
How do I install Clawhub Installer?
Run "npx skills add GPTomics/bioSkills --skill clawhub-installer" in your project. The skills CLI installs it for Claude Code, Cursor, Codex and 70+ other agents. In Claude on the web, upload the skill folder as a ZIP under Customize > Skills.
Does Clawhub Installer work in Cursor and Codex?
Yes. Clawhub Installer uses the open SKILL.md format, so it works in Claude Code, Claude, Cursor, OpenAI Codex, Gemini CLI, GitHub Copilot and other agents that support agent skills.
Is Clawhub Installer free?
Clawhub Installer is open source on GitHub under the MIT license. It is free to install; check the license before commercial use.
Who made Clawhub Installer?
Clawhub Installer is published by GPTomics in the GPTomics/bioSkills repository, together with 29 other skills.
