foryourhealth111-pixel
Install Bio Database Evidence
Pick your agent. Every command is ready to paste.
npx skills add foryourhealth111-pixel/Vibe-Skills --skill bio-database-evidenceThe open skills CLI detects your agents (Claude Code, Cursor, Codex and 70+ more) and installs to the right folder. Add -g to install globally.
01
Install it
Run the command above, or upload the folder in Claude.
02
Ask naturally
Describe the task. Your agent loads bio-database-evidence when the request matches its description.
03
Name it if needed
If it does not trigger, say “use the bio-database-evidence skill”. In Codex, type $bio-database-evidence.
Bio Database Evidence
Use This Skill For
Use this skill when the main task is biological database lookup, annotation, or evidence gathering across one or more biological sources:
- Gene annotation, identifiers, RefSeq, Ensembl IDs, orthologs, VEP, GO, and genomic coordinates.
- Variant clinical significance, VUS interpretation support, ClinVar review status, cancer mutations, and COSMIC evidence.
- GWAS Catalog trait associations, rs IDs, p-values, summary statistics, and genetic epidemiology evidence.
- Pathway mapping, ID conversion, KEGG pathways, Reactome enrichment, disease pathways, and pathway evidence.
- Target-disease association evidence, tractability, safety, known drugs, and Open Targets evidence.
- Protein structure evidence from AlphaFold DB or RCSB PDB, including UniProt IDs, mmCIF/PDB downloads, pLDDT, PAE, and structure metadata.
- Protein-protein interaction evidence, STRING networks, hub proteins, and enrichment evidence.
- Reference single-cell data lookup from CELLxGENE Census when the user asks for census metadata or expression data, not full downstream analysis.
- Cross-database biological ID mapping and evidence tables across multiple resources.
Do Not Use This Skill For
- Single-cell RNA-seq analysis, clustering, UMAP, marker genes, cell annotation, AnnData/h5ad container editing, or scVI/scANVI batch-correction planning. Use
scanpy. - Bulk RNA-seq differential expression. Use
pydeseq2. - BAM, SAM, CRAM, VCF, pileup, coverage, or region extraction as a primary file-processing task.
- deepTools signal-track processing and heatmaps.
- Protein language models, embeddings, inverse folding, or protein-design workflows.
- Constraint-based metabolic modeling, FBA, or metabolic-engineering simulation.
- BED/genomic interval embeddings, genomic-region ML, or gene regulatory network inference.
- FCS or flow-cytometry file parsing.
Workflow
- Identify the biological entity type: gene, transcript, variant, pathway, target, protein structure, protein interaction, trait association, or reference cell population.
- Pick the narrowest source that answers the evidence question.
- Preserve source names, query terms, access dates, identifiers, and API caveats in the result.
- Return evidence in a table when comparing multiple sources.
- State when authentication, license, rate limits, or non-public access restricts a source.
Source Guide
See references/database-evidence-sources.md for source-specific boundaries and query notes.
Tips for Bio Database Evidence
- • Start a fresh session after installing so your agent picks up the new skill.
- • It bundles reference files. The agent reads them only when needed, so they cost no context until then.
- • It is part of a pack with 30 skills. Install only the ones you need with --skill to keep triggers precise.
- • If two skills overlap, mention the one you want by name.
Questions about Bio Database Evidence
What does the Bio Database Evidence skill do?
Unified biological database evidence owner. Use for gene annotation, variant clinical significance, cancer mutation evidence, GWAS trait associations, pathway mapping, target-disease evidence, protein structures, protein interaction networks, reference single-cell census queries, and cross-database biological ID mapping. Do not use for full single-cell analysis, bulk RNA-seq differential expression, BAM/VCF processin
How do I install Bio Database Evidence?
Run "npx skills add foryourhealth111-pixel/Vibe-Skills --skill bio-database-evidence" in your project. The skills CLI installs it for Claude Code, Cursor, Codex and 70+ other agents. In Claude on the web, upload the skill folder as a ZIP under Customize > Skills.
Does Bio Database Evidence work in Cursor and Codex?
Yes. Bio Database Evidence uses the open SKILL.md format, so it works in Claude Code, Claude, Cursor, OpenAI Codex, Gemini CLI, GitHub Copilot and other agents that support agent skills.
Is Bio Database Evidence free?
Bio Database Evidence is open source on GitHub under the Apache-2.0 license. It is free to install; check the license before commercial use.
Who made Bio Database Evidence?
Bio Database Evidence is published by foryourhealth111-pixel in the foryourhealth111-pixel/Vibe-Skills repository, together with 29 other skills.
